Never mind: I just realised that because I told him to make two of the gear, it probably is taking twice the time. It says he's still crafting. :D

I'm leaving this up in case anyone else needs it later.

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I had my pet Smoking Mirror craft two climbing gear last night. When I looked in the morning there were none in my inventory, but the cotton and ore used to make them were gone.

When I started I had 28/30 inventory slots. Toki was working on upgrading my warehouse, however, and the inventory size upgrade should have finished before the gear was completed. I have not captured any new pets so I know I didn't use them.

In short, I know I had the space and the materials... where did my gear go?